STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
CKAN_02690800Mg-protoporphyrin IX chelatase; Involved in chlorophyll biosynthesis. Catalyzes the insertion of magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX. Belongs to the Mg-chelatase subunits D/I family. (326 aa)    
Predicted Functional Partners:
CKAN_00457300
RING-type domain-containing protein.
  
 0.994
CKAN_01163200
Zinc finger family protein.
  
 0.994
CKAN_02303600
Magnesium-chelatase subunit ChlH, chloroplastic.
 
 
 0.993
CKAN_00543500
Magnesium protoporphyrin IX methyltransferase, chloroplastic.
 
 
 0.962
CKAN_01937900
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
  
 
 0.946
CKAN_02372400
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
 
 0.946
COQ3
Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.
  
 
 0.942
CKAN_01942900
Amino_oxidase domain-containing protein.
  
 
 0.838
CKAN_01283200
Phytoene dehydrogenase, chloroplastic/chromoplastic.
  
 
 0.838
CKAN_01430600
Prolycopene isomerase, chloroplastic.
  
 
 0.838
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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