STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02429600CAAX amino terminal protease. (371 aa)    
Predicted Functional Partners:
CKAN_00452000
Putative UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY.
     
 0.650
CKAN_00108100
Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like protein.
     
 0.582
CKAN_01530400
Stromal cell-derived factor 2-like protein.
     
 0.547
CKAN_02027300
Stromal cell-derived factor 2-like protein.
     
 0.547
CKAN_00219700
2-phytyl-1,4-beta-naphthoquinone methyltransferase, chloroplastic-like protein.
  
    0.516
CKAN_00220500
UbiE/COQ5 methyltransferase.
  
    0.515
CKAN_02498500
DUF1995 domain-containing protein.
  
    0.510
CKAN_00393600
Protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB2, chloroplastic.
  
     0.475
CKAN_01332100
Protein CHAPERONE-LIKE PROTEIN OF POR1, chloroplastic isoform X2.
  
     0.424
CKAN_00052300
Alpha-1,4-fucosyltransferase.
     
 0.416
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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