STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01178300Glycosyl transferase. (738 aa)    
Predicted Functional Partners:
CKAN_00303400
ERCC4 domain-containing protein.
   
 0.886
CKAN_02325800
Phosphoglucan phosphatase LSF1, chloroplastic isoform X1.
    
 0.834
CKAN_02113400
Phosphoglucan phosphatase DSP4, amyloplastic isoform X1.
    
 0.821
CKAN_00520100
Dolichyl-phosphate beta-glucosyltransferase.
  
 0.813
CKAN_00358200
Isoamylase 1, chloroplastic.
   
 0.811
CKAN_01105600
1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic isoform X1.
   
 0.811
CKAN_02219600
1,4-alpha-glucan-branching enzyme 1, chloroplastic/amyloplastic isoform X1.
   
 0.811
CKAN_01487600
Uncharacterized protein.
   
 0.811
CKAN_01807200
1,4-alpha-glucan-branching enzyme 3, chloroplastic/amyloplastic.
   
 0.811
CKAN_00330900
Glycoside hydrolase.
   
 0.811
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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