STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01187300Mg2+ transporter protein. (452 aa)    
Predicted Functional Partners:
CKAN_01748500
Adenosine 5' phosphosulfate reductase.
  
  
 0.496
CKAN_02375500
Adenosine 5' phosphosulfate reductase.
  
  
 0.496
CKAN_00962500
Tryptophan synthase alpha chain-like protein; Belongs to the TrpA family.
   
  
 0.490
CKAN_02572300
Bifunctional riboflavin kinase/FMN phosphatase-like protein.
     
 0.483
CKAN_01024000
Thiamine biosynthesis protein ThiC.
     
 0.464
CKAN_01425400
Imidazoleglycerol-phosphate dehydratase; Belongs to the imidazoleglycerol-phosphate dehydratase family.
     
 0.456
CKAN_02416900
Formyl transferase.
  
  
 0.434
CKAN_02680000
Tetrapyrrole methylase; Belongs to the precorrin methyltransferase family.
  
  
 0.429
CKAN_01319100
Lysine--tRNA ligase.
  
    0.424
CKAN_01927800
Lysine--tRNA ligase.
  
    0.424
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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