STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02023400Putative mitochondrial protein. (693 aa)    
Predicted Functional Partners:
CKAN_00838400
SANT/Myb domain-containing protein.
    
 0.552
CKAN_01579200
ATP-dependent DNA helicase mph1 isoform X1.
    
 0.544
CKAN_02420400
DNA/RNA polymerases superfamily protein.
 
     0.534
CKAN_01764800
Transposon Tf2-1 polyprotein.
 
     0.534
CKAN_00477800
Chromo domain-containing protein.
  
     0.520
CKAN_00997200
Integrase catalytic domain-containing protein.
  
     0.502
CKAN_02247700
Reverse transcriptase.
 
     0.500
CKAN_02467800
NPL4-like protein 2.
    
  0.487
CKAN_02758400
Chromo domain-containing protein.
  
     0.484
CKAN_02654700
Protein ABSCISIC ACID-INSENSITIVE 5.
  
     0.466
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.