STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01254500Cysteine proteinase COT44; Belongs to the peptidase C1 family. (385 aa)    
Predicted Functional Partners:
CKAN_00287600
UPF0235 protein isoform X1.
    
   0.835
CKAN_02146700
Putative cysteine protease RD19C; Belongs to the peptidase C1 family.
  
0.536
CKAN_00771000
Putative cysteine protease RD19C; Belongs to the peptidase C1 family.
  
0.531
CKAN_02033200
Protein transport protein SEC13 B-like protein; Belongs to the WD repeat SEC13 family.
    
  0.524
CKAN_01155800
Protein transport protein SEC13 B-like protein; Belongs to the WD repeat SEC13 family.
    
  0.524
CKAN_00821900
Protein transport protein SEC31 B isoform X2.
     
 0.510
CKAN_00331000
Protein transport protein SEC31 B-like protein.
     
 0.510
CKAN_00202500
Beta-hexosaminidase.
    
  0.471
CKAN_00619200
Glycoside hydrolase family 20.
    
  0.471
CKAN_02611100
Beta-hexosaminidase.
    
  0.471
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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