STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01312600Putative xyloglucan endotransglucosylase/hydrolase protein 8. (255 aa)    
Predicted Functional Partners:
CKAN_01326500
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 
 0.824
CKAN_01763000
Vacuolar protein sorting-associated protein 26A.
    
 
 0.792
CKAN_02214500
Vacuolar protein sorting-associated protein 26B.
    
 
 0.792
CKAN_02071000
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.778
CKAN_00780800
Glutamic acid-rich-like protein isoform X1.
   
 
 0.778
CKAN_02154700
Uncharacterized protein.
   
 
 0.778
CKAN_00727800
Photosystem II stability/assembly factor HCF136, chloroplastic.
    
 0.696
CKAN_00518400
AP-3 complex subunit beta; Belongs to the adaptor complexes large subunit family.
    
 0.644
CKAN_02108600
DNA mismatch repair protein MSH3.
    
   0.638
CKAN_01001300
Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.
    
 0.626
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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