STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02320700Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. (315 aa)    
Predicted Functional Partners:
CKAN_00472900
Trigger factor-like protein TIG, Chloroplastic isoform X1.
  
 
 0.946
CKAN_01930100
2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial isoform X1.
  
 
 0.919
CKAN_02543800
Dihydroxy-acid dehydratase, chloroplastic.
  
 
 0.911
CKAN_00478100
Ribosomal protein S10.
  
   0.900
CKAN_02151200
LisH domain-containing protein ARMC9-like protein.
   
   0.897
CKAN_02401600
Ribosomal protein L33 family protein.
  
   0.888
CKAN_02416900
Formyl transferase.
  
 0.886
CKAN_01115700
Putative bifunctional dihydrofolate reductase-thymidylate synthase isoform X1.
    
 0.871
CKAN_01667000
50S ribosomal protein L11, chloroplastic isoform X2; Belongs to the universal ribosomal protein uL11 family.
   
 
 0.868
CKAN_01510500
50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
  
   0.865
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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