STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00404200Protein SMG7-like protein. (977 aa)    
Predicted Functional Partners:
CKAN_01351600
Regulator of nonsense transcripts UPF3 isoform X1.
  
 0.959
CKAN_01942700
Regulator of nonsense transcripts UPF3 isoform X1.
  
 0.959
CKAN_00964800
Regulator of nonsense transcripts 1.
   
 0.954
CKAN_01630000
Regulator of nonsense transcripts 1.
   
 0.954
CKAN_00307800
RNA-binding protein 8A.
    
 0.949
CKAN_00641600
Serine/threonine-protein kinase TOR; Belongs to the PI3/PI4-kinase family.
   
 0.866
CKAN_00252700
Phosphatidylinositol 3-/4-kinase; Belongs to the PI3/PI4-kinase family.
   
 0.866
CKAN_02732500
Serine/threonine-protein kinase TOR.
   
 0.866
CKAN_01540200
Nuclear cap-binding protein subunit 2.
   
 0.856
CKAN_01834900
ATP-dependent DNA helicase 2 subunit KU80; Single-stranded DNA-dependent ATP-dependent helicase.
    
 
 0.852
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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