STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01658900LRAT-like domain-containing protein. (261 aa)    
Predicted Functional Partners:
CKAN_01845700
Ankyrin-1 isoform X1.
  
 0.904
CKAN_02572800
TPR repeat-containing thioredoxin TTL1-like protein.
  
 0.871
CKAN_02690000
TPR repeat-containing thioredoxin TTL1-like protein.
  
 0.871
CKAN_01829600
TPR repeat-containing thioredoxin TTL1-like protein.
  
 0.871
CKAN_01047900
Heat shock protein 17.
   
 0.835
CKAN_02535700
TPR repeat-containing thioredoxin TDX.
  
 0.827
CKAN_02336800
Iron-sulfur cluster assembly protein; Scaffold protein for the de novo synthesis of iron-sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins.
  
 
 0.806
CKAN_01431500
DnaJ domain-containing protein.
  
 0.788
CKAN_02299500
Iron-sulfur cluster co-chaperone protein HscB, mitochondrial.
  
 0.788
CKAN_01502900
Iron-sulfur cluster co-chaperone protein HscB, mitochondrial isoform X4.
  
 0.788
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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