STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01688900Nuclear protein DGCR14. (515 aa)    
Predicted Functional Partners:
CKAN_00987500
WD40 repeat.
    
 
 0.819
CKAN_00206400
Protein FRA10AC1.
    
 
 0.768
CKAN_00144000
U2 small nuclear ribonucleoprotein A.
    
   0.732
CKAN_00117800
RNA-processing protein.
   
 
 0.725
CKAN_01371500
U5 small nuclear ribonucleoprotein component CLO.
    
 
 0.710
CKAN_00976200
Pre-mRNA-splicing factor syf2-like protein.
    
   0.540
CKAN_00224000
Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7.
    
 
 0.503
CKAN_00440600
Polyadenylate-binding protein RBP47B.
    
 
 0.495
CKAN_02027200
Protein RTF2.
      
 0.489
CKAN_02244000
Crooked neck-like protein 1.
      
 0.485
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.