STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00531400Caffeoylshikimate esterase-like protein isoform X1. (315 aa)    
Predicted Functional Partners:
CKAN_01167600
Caffeic acid 3-O-methyltransferase-like protein isoform X1; Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O-methyltransferase family.
     
 0.876
CKAN_02627700
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.
  
 
 0.869
CKAN_00235500
Caffeic acid O-methyltransferase 1.
     
 0.864
CKAN_00255100
AMP-dependent synthetase/ligase.
    
 0.863
CKAN_00133600
AMP-dependent synthetase/ligase.
    
 0.860
CKAN_00485500
Long chain aycl-CoA synthetase 1.
    
 0.860
CKAN_02665600
Long chain aycl-CoA synthetase 9.
    
 0.859
CKAN_01300900
4-coumarate--CoA ligase-like protein 1.
    
 0.856
CKAN_00025300
AMP-dependent synthetase and ligase family protein.
    
 0.850
CKAN_00309800
Cytochrome P450 98A2; Belongs to the cytochrome P450 family.
    
 0.844
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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