STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02026500Ribonuclease H domain-containing protein. (325 aa)    
Predicted Functional Partners:
CKAN_00055200
Putative Xaa-Pro aminopeptidase P; Belongs to the peptidase M24B family.
     
 0.636
CKAN_00623000
Uncharacterized protein; Belongs to the peptidase M24B family.
     
 0.636
CKAN_02671000
Photosystem II reaction center Psb28 protein; Belongs to the Psb28 family.
     
 0.607
CKAN_01253500
Protein WVD2-like protein 4 isoform X2.
     
 0.607
CKAN_00188200
Xaa-Pro dipeptidase.
   
 
 0.527
CKAN_00485400
Putative Xaa-Pro aminopeptidase 3 isoform X3.
     
 0.527
CKAN_01896100
WD_REPEATS_REGION domain-containing protein.
     
 0.416
CKAN_02440400
WD_REPEATS_REGION domain-containing protein.
     
 0.416
CKAN_01361200
WD_REPEATS_REGION domain-containing protein.
     
 0.416
CKAN_02184800
Root cap.
     
 0.416
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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