STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01081300Phospholipase C. (416 aa)    
Predicted Functional Partners:
CKAN_00450700
39S ribosomal protein L46, mitochondrial.
   
   0.814
CKAN_02054200
Ribosomal protein L28.
   
 
 0.788
CKAN_01636500
39S ribosomal protein L22, mitochondrial-like protein; Belongs to the universal ribosomal protein uL22 family.
   
 
 0.784
CKAN_01534900
Ribosomal protein L13; Belongs to the universal ribosomal protein uL13 family.
   
 
 0.780
CKAN_00481900
Ribosomal protein L25/L23.
   
 
 0.768
CKAN_00556200
Ribosomal protein L25/L23.
   
 
 0.768
CKAN_01809600
39S ribosomal protein L47, mitochondrial-like protein.
   
 
 0.767
CKAN_02266600
Ribosomal protein L6; Belongs to the universal ribosomal protein uL6 family.
   
   0.748
CKAN_01149000
50S ribosomal protein L34.
   
 
 0.747
CKAN_02401600
Ribosomal protein L33 family protein.
   
   0.747
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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