STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01292700Patatin; Lipolytic acyl hydrolase (LAH). Belongs to the patatin family. (830 aa)    
Predicted Functional Partners:
CKAN_00222400
Heme peroxidase.
   
 0.583
CKAN_02504100
Lysophospholipid acyltransferase LPEAT1 isoform X2.
     
 0.538
CKAN_00382600
Phospholipase D Z.
     
 0.526
CKAN_02591700
Acyl-lipid 9-3-desaturase-like protein.
     
 0.525
CKAN_00882200
JmjC domain-containing protein.
     
 0.409
CKAN_00881900
JmjC domain-containing protein C isoform X1.
     
 0.409
CKAN_02029100
Omega-6 fatty acid desaturase, chloroplastic-like protein.
     
 0.400
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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