STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02527200Thermospermine synthase ACAULIS5. (296 aa)    
Predicted Functional Partners:
CKAN_01833100
Arginase 1, mitochondrial; Belongs to the arginase family.
  
 
 0.935
CKAN_00661300
Putative polyamine oxidase 5.
     
 0.886
CKAN_02148700
Arginine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
    
 0.858
CKAN_02361600
Ornithine/DAP/Arg decarboxylase.
  
 0.855
CKAN_00783500
Ornithine/DAP/Arg decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 0.855
CKAN_00049600
Putative acetyltransferase NATA1-like protein.
    
 0.851
CKAN_02517600
Saccharopine dehydrogenase / Homospermidine synthase.
    
 0.849
CKAN_00377700
S-adenosylmethionine decarboxylase proenzyme-like protein.
    
 0.844
CKAN_02372400
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
  
 
 0.844
CKAN_02469300
S-adenosylmethionine decarboxylase proenzyme.
  
 
 0.841
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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