STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02646900Aluminum-activated malate transporter. (485 aa)    
Predicted Functional Partners:
CKAN_02149800
Transformation/transcription domain-containing protein; Belongs to the PI3/PI4-kinase family.
   
 
 0.783
CKAN_02083600
TATA box-binding protein-associated factor RNA polymerase I subunit B.
    
 
 0.769
CKAN_01002400
SAGA-associated factor 11.
    
 
 0.762
CKAN_02537000
Transcriptional adapter.
    
 
 0.749
CKAN_01268500
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.
    
 
 0.733
CKAN_02287500
TATA box binding protein associated factor TAF.
    
 
 0.728
CKAN_00556500
Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.
    
 
 0.724
CKAN_00553400
Transcription initiation factor TFIID subunit 10; TAFs are components of the transcription factor IID (TFIID) complex that is essential for mediating regulation of RNA polymerase transcription; Belongs to the TAF10 family.
    
 
 0.724
CKAN_00384700
Transcription initiation factor TFIID subunit 5.
    
 
 0.724
CKAN_02120600
Transcription initiation factor TFIID subunit 12b-like protein isoform X2.
    
 
 0.723
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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