STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01606200Chaperone protein dnaJ 20, chloroplastic-like protein. (218 aa)    
Predicted Functional Partners:
CKAN_01047900
Heat shock protein 17.
  
 0.892
CKAN_02572300
Bifunctional riboflavin kinase/FMN phosphatase-like protein.
   
 0.883
PURA
Adenylosuccinate synthetase, chloroplastic; Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP.
  
 0.723
CKAN_02325400
Bifunctional purine biosynthesis protein PurH-like protein isoform X2.
   
  0.692
CKAN_01455400
Urease accessory protein UreD.
   
  0.688
CKAN_01876500
DnaJ domain-containing protein.
  
 0.688
CKAN_02170100
DnaJ subfamily C member 7 isoform X1.
  
 0.686
CKAN_01905900
DnAJ-like protein.
  
 0.684
CKAN_02656200
DnaJ subfamily B member 1.
  
 0.678
CKAN_00148600
DnaJ subfamily B member 4.
  
 0.670
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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