STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01638900Acidic endochitinase; Belongs to the glycosyl hydrolase 18 family. (300 aa)    
Predicted Functional Partners:
CKAN_02611100
Beta-hexosaminidase.
     
 0.790
CKAN_00202500
Beta-hexosaminidase.
     
 0.599
CKAN_00619200
Glycoside hydrolase family 20.
     
 0.599
CKAN_00618700
Beta-hexosaminidase.
     
 0.599
CKAN_02620500
Endochitinase PR4.
     
 0.594
CKAN_01402200
Glycoside hydrolase.
   
  
 0.556
CKAN_00300100
Endochitinase PR4.
     
 0.514
CKAN_00849700
Endochitinase PR4.
     
 0.514
CKAN_02671500
Notchless protein.
   
  
 0.445
CKAN_02024400
Chitotriosidase-1-like protein; Belongs to the glycosyl hydrolase 18 family.
     
 0.436
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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