STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02469200Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family. (95 aa)    
Predicted Functional Partners:
CKAN_02573400
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
    
 0.999
CKAN_01961800
Autophagy protein 5; Required for autophagy.
   
 0.999
CKAN_01561400
Autophagy-related protein 3.
    
 0.996
CKAN_00264700
WD40 repeat.
    
 0.993
CKAN_02639700
WD40 repeat.
    
 0.993
CKAN_01015900
Ubiquitin-like protein-conjugating enzyme ATG10 isoform X1; Belongs to the cytochrome b5 family.
    
 0.979
CKAN_01559000
Autophagy-related protein.
   
 0.965
CKAN_01888900
Autophagy-related protein.
   
 0.965
CKAN_02450700
Autophagy-related protein.
   
 0.965
CKAN_01745600
Autophagy-related protein.
   
 0.965
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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