STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02552400Laccase; Lignin degradation and detoxification of lignin-derived products; Belongs to the multicopper oxidase family. (595 aa)    
Predicted Functional Partners:
CKAN_01874800
Putative acyl-activating enzyme 19 isoform X1.
     
 0.712
CKAN_01978100
Plastocyanin; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I. Belongs to the plastocyanin family.
   
 0.629
CKAN_02159700
Plastocyanin; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I. Belongs to the plastocyanin family.
   
 0.629
CKAN_00359300
Cation-transporting P-type ATPase.
  
 
 0.605
CKAN_01039300
Nickel/cobalt transporter, high-affinity.
  
 
 0.605
CKAN_01066300
Copper-transporting ATPase RAN1.
  
 
 0.605
CKAN_00355400
Copper-transporting ATPase PAA2, chloroplastic.
  
 
 0.605
CKAN_00441100
Putative copper-transporting ATPase HMA5.
  
 
 0.605
CKAN_00471300
Copper-transporting ATPase PAA1, chloroplastic-like protein isoform X1.
  
 
 0.605
CKAN_00701800
Copper-transporting ATPase PAA1, chloroplastic.
  
 
 0.605
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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