STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02601900Titin isoform X1. (1346 aa)    
Predicted Functional Partners:
CKAN_00620800
DNA-damage-repair/toleration protein DRT102.
  
 
 0.849
CKAN_01891100
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
  
 
 0.598
CKAN_02513100
Beta galactosidase small chain/ domain-containing protein; Belongs to the glycosyl hydrolase 2 family.
    
 0.562
CKAN_00420900
Chromatin structure-remodeling complex protein SYD-like protein isoform X1.
    
 0.528
CKAN_02533900
Chromatin structure-remodeling complex protein SYD isoform X1.
    
 0.528
CKAN_00500000
Spermatogenesis-associated protein 20.
    
 0.494
CKAN_02314100
Mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 1 family.
  
 
 0.493
CKAN_02303200
Mannosylglycoprotein endo-beta-mannosidase.
    
 0.483
CKAN_00937300
Protein HOTHEAD-like protein.
     
 0.479
CKAN_00941000
Protein HOTHEAD-like protein.
     
 0.479
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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