STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00012800Putative RNA-binding protein Luc7-like protein 2 isoform X2. (460 aa)    
Predicted Functional Partners:
CKAN_00553800
RNA-binding protein 25 isoform X1.
   
 0.968
CKAN_00144000
U2 small nuclear ribonucleoprotein A.
   
 0.915
CKAN_00282700
Small nuclear ribonucleoprotein-associated protein B.
    
 0.899
CKAN_00228700
Protein CROWDED NUCLEI 4.
   
  0.890
CKAN_01049400
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
    
 0.880
CKAN_02130200
Zinc finger protein.
    
 0.880
CKAN_00017900
RNA-processing protein.
   
 
 0.875
CKAN_02342800
Putative small nuclear ribonucleoprotein F.
   
 
 0.873
CKAN_00430300
Splicing factor 3B subunit 1.
   
 0.856
CKAN_00497800
Nuclear cap-binding protein subunit 1.
    
 
 0.854
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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