STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00473400Growth hormone-regulated TBC protein 1-like protein isoform X1. (131 aa)    
Predicted Functional Partners:
CKAN_01394600
Septum-promoting GTP-binding protein 1.
   
 0.970
CKAN_00350800
Protein NRDE2.
    
 0.953
CKAN_02307400
E3 ubiquitin-protein ligase KEG isoform X2.
    
 
 0.798
CKAN_01845700
Ankyrin-1 isoform X1.
    
   0.734
CKAN_00313100
Cilia-and flagella-associated protein 20.
    
   0.717
CKAN_00836800
UPF0468 protein CG5343 family.
    
   0.717
CKAN_00123300
Hypoxanthine phosphoribosyltransferase; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
    
   0.715
CKAN_02137600
Gamma-interferon-inducible lysosomal thiol reductase.
    
   0.715
CKAN_01711700
Protein TONSOKU.
    
 
 0.696
CKAN_00118400
Ras-related protein Rab7.
    
 0.665
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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