STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00519100Methyl-CpG-binding domain-containing protein 5 isoform X3. (433 aa)    
Predicted Functional Partners:
CKAN_00073600
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.901
CKAN_01123100
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.901
CKAN_00193400
WD-40 repeat-containing protein MSI4-like protein.
    
 0.804
CKAN_00080900
WD-40 repeat-containing protein MSI4-like protein; Belongs to the disease resistance NB-LRR family.
    
 0.804
CKAN_00193800
WD-40 repeat-containing protein MSI4-like protein.
    
 0.804
CKAN_01776900
WD40 repeat.
    
 0.804
CKAN_01317400
PAH domain-containing protein/Sin3_corepress domain-containing protein.
    
 0.757
CKAN_02015000
Paired amphipathic helix protein Sin3-like protein 4 isoform X1.
    
 0.757
CKAN_02752600
Zinc finger protein.
    
 0.751
CKAN_02673600
Zinc finger protein.
    
 0.751
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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