STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00509000E3 ubiquitin-protein ligase SP1. (370 aa)    
Predicted Functional Partners:
CKAN_00398100
Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.
     
 0.672
CKAN_01317500
Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.
     
 0.672
CKAN_00648700
Interferon-related developmental regulator 1-like protein.
   
 
  0.637
CKAN_01289800
Plant UBX domain-containing protein 7.
    
  0.624
CKAN_01959700
UBX domain-containing protein.
    
  0.624
CKAN_02301700
Mitochondrial Rho GTPase.
     
 0.621
CKAN_00512700
Mitochondrial Rho GTPase.
     
 0.621
CKAN_00461700
Coiled-coil domain-containing protein 22 isoform X1.
   
 
  0.612
CKAN_01166400
Mitochondrial outer membrane protein porin 2-like protein.
     
 0.521
CKAN_01695500
Mitochondrial outer membrane protein porin of-like protein.
     
 0.521
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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