STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00732200Putative receptor-like protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. (1020 aa)    
Predicted Functional Partners:
CKAN_00725300
Elongation factor 1-gamma 2.
    
  0.528
CKAN_01337700
Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.
    
 0.474
CKAN_02403600
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
     
 0.474
CKAN_00282700
Small nuclear ribonucleoprotein-associated protein B.
    
 0.469
CKAN_02342800
Putative small nuclear ribonucleoprotein F.
    
  0.469
CKAN_00146700
Elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
     
 0.467
CKAN_02207000
Mitogen-activated protein kinase kinase kinase 1.
    
  0.453
CKAN_01923100
Mitogen-activated protein kinase kinase kinase 1-like protein.
    
 
0.453
CKAN_02104600
DNA-damage-repair/toleration protein DRT111, chloroplastic.
    
  0.428
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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