STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00777000Protein WUSCHEL. (276 aa)    
Predicted Functional Partners:
CKAN_00080500
WD40 repeat.
      
 0.513
CKAN_02626400
Leucine-rich repeat.
      
 0.512
CKAN_01066900
Protein UNUSUAL FLORAL ORGANS.
      
 0.505
CKAN_00535300
Floricaula/leafy-like transcription factor; Probable transcription factor. Belongs to the FLO/LFY family.
   
  
 0.478
CKAN_02509500
Scarecrow-like protein 18; Belongs to the GRAS family.
   
  
 0.468
CKAN_02153600
Receptor protein kinase CLAVATA1; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
      
 0.445
CKAN_02153500
Receptor protein kinase CLAVATA1-like protein; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family.
      
 0.445
CKAN_02117700
Agamous-like MADS-box protein AGL15.
      
 0.444
CKAN_01438600
Transcription factor AS1.
   
  
 0.437
CKAN_02083000
LOB domain-containing protein 16-like protein.
    
 
 0.436
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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