STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00851700Transcription factor bHLH62-like protein. (572 aa)    
Predicted Functional Partners:
CKAN_01122500
E3 ubiquitin-protein ligase FANCL isoform X1.
    
 0.862
CKAN_00561000
DELLA protein GAI1-like protein; Belongs to the GRAS family.
     
 0.524
CKAN_00336400
DELLA protein GAI1-like protein; Belongs to the GRAS family.
     
 0.524
CKAN_00593800
DELLA protein GAI-like protein; Belongs to the GRAS family.
     
 0.517
CKAN_01419300
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
    
  0.499
CKAN_01195500
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
    
  0.499
CKAN_00943700
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
    
  0.499
CKAN_00990500
60S ribosomal protein L10a.
    
  0.499
CKAN_01229800
60S ribosomal protein L10a-like protein.
    
  0.499
CKAN_01827200
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
    
  0.468
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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