STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01105000Transmembrane 9 superfamily member; Belongs to the nonaspanin (TM9SF) (TC 9.A.2) family. (629 aa)    
Predicted Functional Partners:
CKAN_02015600
Pentatricopeptide repeat-containing protein, mitochondrial.
      
 0.439
CKAN_02683000
Domain X.
      
 0.433
CKAN_02734900
NADH:ubiquinone/plastoquinone oxidoreductase.
      
 0.431
CKAN_02386700
Protein trichome birefringence-like protein 6.
      
 0.426
CKAN_01562400
Vacuolar protein sorting-associated protein 32 2 isoform X2.
    
  0.416
CKAN_02143500
Vacuolar protein sorting-associated protein 32 2 isoform X1.
    
  0.416
CKAN_00073900
Vacuolar protein sorting-associated protein 32 2.
    
  0.416
CKAN_00186700
Vacuolar protein sorting-associated protein 32 2.
    
  0.416
CKAN_02143600
Uncharacterized protein.
    
  0.416
CKAN_01399200
Pentatricopeptide repeat.
      
 0.414
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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