STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01467500Protein LSD1. (214 aa)    
Predicted Functional Partners:
CKAN_00077900
ESCRT-related protein CHMP1B-like protein.
   
 0.962
CKAN_00875600
Vacuolar protein sorting-associated protein 24 1-like protein.
   
 0.957
CKAN_00110300
ESCRT-related protein CHMP1-like protein.
   
 0.956
CKAN_02480300
Protein SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT 1; Belongs to the AAA ATPase family.
    
 0.887
CKAN_00528100
Protein SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT 1-like protein; Belongs to the AAA ATPase family.
    
 0.887
CKAN_01036100
Protein SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT 1 isoform X1; Belongs to the AAA ATPase family.
    
 0.887
CKAN_02656300
Subtilisin-like protein protease SBT5.3; Belongs to the peptidase S8 family.
    
 0.887
CKAN_01411000
Vacuolar protein sorting-associated protein 60.2.
   
 0.882
CKAN_02648700
Charged multivesicular body protein 5.
   
 0.882
CKAN_02648600
Vacuolar protein sorting-associated protein 60.2.
   
 0.882
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.