STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01553900ABC transporter B family member 28. (722 aa)    
Predicted Functional Partners:
CKAN_01894600
Acetyl-CoA carboxylase 1-like protein.
   
 0.647
CKAN_00917800
ABC transporter B family member 25-like protein isoform X1.
  
 
0.587
CKAN_02662300
USP domain-containing protein; Belongs to the peptidase C19 family.
    
  0.565
CKAN_02517500
Uncharacterized protein.
   
 0.560
CKAN_02492000
Isovaleryl-CoA dehydrogenase, mitochondrial.
   
 0.560
CKAN_02492600
Isovaleryl-CoA dehydrogenase, mitochondrial.
   
 0.560
CKAN_01517600
Acyl-coenzyme A oxidase 4, peroxisomal.
   
 0.559
CKAN_00928500
Acyl-coenzyme A oxidase; Belongs to the acyl-CoA oxidase family.
   
 0.557
CKAN_01638200
Peroxisomal acyl-coenzyme A oxidase 1.
   
 0.557
CKAN_01638500
Peroxisomal acyl-coenzyme A oxidase 1-like protein.
   
 0.557
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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