STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01780600BRCT domain-containing protein. (1102 aa)    
Predicted Functional Partners:
CKAN_01450700
Phosphatidylinositol 3-/4-kinase; Belongs to the PI3/PI4-kinase family.
    
 0.975
CKAN_02092300
Serine/threonine-protein kinase ATR isoform X1.
   
 0.973
CKAN_00996200
Protein BREAST CANCER SUSCEPTIBILITY 2 B-like protein isoform X1.
   
 0.964
CKAN_02660600
Protein BREAST CANCER SUSCEPTIBILITY 2 B-like protein isoform X1.
   
 0.964
CKAN_00601300
Regulator of telomere elongation helicase 1 isoform X2.
   
 0.955
CKAN_01967100
Fanconi anemia group J protein isoform X2.
   
 0.955
CKAN_00878700
ATP-dependent DNA helicase RecQ-like protein.
   
 0.954
CKAN_02182500
Nijmegen breakage syndrome 1 protein isoform X1.
    
 0.951
CKAN_01605800
DNA repair protein RAD50.
    
 0.941
CKAN_01326200
Chlorophyll a-b binding protein, chloroplastic; The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated; Belongs to the light-harvesting chlorophyll a/b-binding (LHC) protein family.
   
 0.926
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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