STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01916400Thioredoxin-like protein 4, chloroplastic isoform X1. (215 aa)    
Predicted Functional Partners:
CKAN_01887100
CCR4-NOT transcription complex subunit 1 isoform X2.
   
 0.986
CKAN_01087400
General negative regulator of transcription subunit 3-like protein isoform X3.
    
 0.976
CKAN_00902300
CCR4-Not complex component.
    
 0.976
CKAN_00405500
Tetratricopeptide repeat-containing domain-containing protein.
   
 0.963
CKAN_01520000
Cell differentiation protein RCD1 isoform X1.
    
 0.958
CKAN_01807100
CCR4-NOT transcription complex subunit 9.
    
 0.958
CKAN_02676800
Cell differentiation protein RCD1.
    
 0.958
CKAN_01817000
CCR4-NOT transcription complex subunit 4.
    
 0.954
CKAN_00538100
General negative regulator of transcription subunit 4 isoform X1.
    
 0.954
CKAN_00410700
Zinc finger protein.
    
 0.954
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.