STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02117800Eukaryotic initiation factor 4A-3. (457 aa)    
Predicted Functional Partners:
CKAN_00307800
RNA-binding protein 8A.
   
 0.996
CKAN_01570600
Protein mago nashi.
   
 0.990
CKAN_02017800
Pre-mRNA-splicing factor CWC22.
    
 0.975
CKAN_00302400
Pre-mRNA-splicing factor CWC22.
    
 0.975
CKAN_00408300
Pre-mRNA-processing-splicing factor 8A.
   
 0.967
CKAN_01371500
U5 small nuclear ribonucleoprotein component CLO.
   
 0.965
CKAN_02011400
Neuroguidin-B isoform X1.
 
 
 0.965
CKAN_00581200
Neuroguidin-B isoform X1.
 
 
 0.965
CKAN_01351600
Regulator of nonsense transcripts UPF3 isoform X1.
   
 0.962
CKAN_01942700
Regulator of nonsense transcripts UPF3 isoform X1.
   
 0.962
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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