STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02063700Choline monooxygenase, chloroplastic isoform X1. (179 aa)    
Predicted Functional Partners:
CKAN_00873500
D-amino acid dehydrogenase-like protein.
  
 0.936
CKAN_00873600
Putative D-amino acid oxidase PA4548 isoform X1.
  
 0.936
CKAN_02264500
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine; Belongs to the GcvT family.
  
 0.936
CKAN_02015100
Betaine aldehyde dehydrogenase 1, chloroplastic; Belongs to the aldehyde dehydrogenase family.
  
 
 0.935
CKAN_01676800
Monodehydroascorbate reductase, chloroplastic/mitochondrial.
  
 0.934
CKAN_01218600
Monodehydroascorbate reductase.
  
 0.934
CKAN_02321200
Monodehydroascorbate reductase 4, peroxisomal.
  
 0.934
CKAN_02657700
Monodehydroascorbate reductase.
  
 0.934
CKAN_02523600
Aldehyde dehydrogenase family 7 member A1; Belongs to the aldehyde dehydrogenase family.
  
 
 0.896
CKAN_01839100
Protein HOTHEAD-like protein.
     
 0.892
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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