STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02289600Secoisolariciresinol dehydrogenase isoform X2. (325 aa)    
Predicted Functional Partners:
CKAN_01115700
Putative bifunctional dihydrofolate reductase-thymidylate synthase isoform X1.
  
 
 0.915
CKAN_01617000
Putative carotenoid cleavage dioxygenase 4, chloroplastic.
     
 0.846
CKAN_01429500
Abscisic-aldehyde oxidase-like protein isoform X1.
     
 0.826
CKAN_01429600
Aldehyde oxidase/xanthine dehydrogenase.
     
 0.826
CKAN_00846400
Zerumbone synthase.
  
  
 
0.789
CKAN_01101500
Glucose/ribitol dehydrogenase.
  
  
 
0.788
CKAN_01874800
Putative acyl-activating enzyme 19 isoform X1.
  
 0.763
CKAN_00172200
Putative inactive nicotinamidase.
  
 0.734
CKAN_01576200
Gluconokinase; Belongs to the gluconokinase GntK/GntV family.
    
 0.713
CKAN_02531700
Putative 3,4-dihydroxy-2-butanone kinase isoform X1.
   
 0.713
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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