STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02440600High mobility group B protein 10. (327 aa)    
Predicted Functional Partners:
CKAN_00073600
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.995
CKAN_01123100
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
   
 0.995
CKAN_01316800
Actin-related protein 4; Belongs to the actin family.
   
 0.984
CKAN_01548500
Histone deacetylase complex subunit SAP18.
   
 
 0.984
CKAN_01683200
Histone deacetylase complex subunit SAP18.
   
 
 0.984
CKAN_00368800
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
 0.948
CKAN_01342000
Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
   
 0.948
CKAN_02082100
Actin-related protein 9; Belongs to the actin family.
    
 0.942
CKAN_00420900
Chromatin structure-remodeling complex protein SYD-like protein isoform X1.
   
 
 0.940
CKAN_02533900
Chromatin structure-remodeling complex protein SYD isoform X1.
   
 
 0.940
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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