STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02453200Isocitrate dehydrogenase NAD regulatory subunit 1, mitochondrial isoform X1. (373 aa)    
Predicted Functional Partners:
CKAN_00531900
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
0.992
CKAN_02485300
Isocitrate dehydrogenase [NAD] subunit, mitochondrial.
  
0.992
CKAN_02329500
Isocitrate dehydrogenase NADP.
  
 0.966
CKAN_00008100
Acetolactate synthase small subunit 2, chloroplastic-like protein.
  
 0.953
CKAN_02110300
Acetolactate synthase small subunit 2, chloroplastic.
  
 0.953
CKAN_01803100
3-isopropylmalate dehydratase large subunit, chloroplastic.
 
 0.951
CKAN_01260500
2-isopropylmalate synthase A-like protein; Belongs to the alpha-IPM synthase/homocitrate synthase family.
  
 0.950
CKAN_00313500
Pyruvate carboxyltransferase.
  
 0.949
CKAN_00440100
Hydroxymethylglutaryl-CoA lyase, mitochondrial-like protein isoform X1.
  
 0.949
CKAN_00606800
Filament-like plant protein 7.
  
 0.940
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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