STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02617700Peptide chain release factor PrfB1, chloroplastic. (461 aa)    
Predicted Functional Partners:
CKAN_01777800
Release factor glutamine methyltransferase isoform X2.
  
 
 0.949
CKAN_02330600
HemK methyltransferase family member 2.
  
 
 0.949
CKAN_01510500
50S ribosomal protein L31; Belongs to the bacterial ribosomal protein bL31 family.
  
 
 0.884
CKAN_02151200
LisH domain-containing protein ARMC9-like protein.
  
 
 0.854
CKAN_00865100
50S ribosomal protein L27, chloroplastic.
  
 
 0.850
CKAN_02508000
50S ribosomal protein L27-like protein isoform X1.
  
 
 0.850
CKAN_00478100
Ribosomal protein S10.
   
 
 0.847
CKAN_01282400
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.847
CKAN_01295200
50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
  
 
 0.847
CKAN_02401600
Ribosomal protein L33 family protein.
   
 
 0.841
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.