STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02668200BED-type domain-containing protein. (597 aa)    
Predicted Functional Partners:
CKAN_02307400
E3 ubiquitin-protein ligase KEG isoform X2.
   
 0.586
CKAN_01845700
Ankyrin-1 isoform X1.
   
  0.553
CKAN_02704200
E3 ubiquitin-protein ligase PRT1-like protein.
    
 0.549
CKAN_02256200
SWIM-type domain-containing protein.
  
 
   0.513
CKAN_00276100
MuDR family transposase isoform 1.
  
 
   0.500
CKAN_02153200
Protein FAR1-RELATED SEQUENCE 5-like protein.
  
 
   0.489
CKAN_00279900
Protein FAR1-RELATED SEQUENCE 5-like protein.
  
 
   0.486
CKAN_01104500
Protein FAR1-RELATED SEQUENCE 5-like protein.
  
 
   0.486
CKAN_02327800
Zinc finger BED domain-containing protein DAYSLEEPER isoform X1.
  
 
   0.484
CKAN_00404900
Zinc finger BED domain-containing protein RICESLEEPER 2-like protein.
  
 
   0.480
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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