STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_02712200Retrotransposon polyprotein. (216 aa)    
Predicted Functional Partners:
CKAN_00838400
SANT/Myb domain-containing protein.
    
 0.552
CKAN_01579200
ATP-dependent DNA helicase mph1 isoform X1.
    
 0.544
CKAN_02073700
Retrovirus-related Pol polyprotein from transposon TNT 1-94.
  
     0.536
CKAN_01057300
Reverse transcriptase, RNA-dependent DNA polymerase.
  
     0.535
CKAN_00456300
Retrovirus-related Pol polyprotein from transposon TNT 1-94 isoform X1.
  
     0.535
CKAN_02136200
Gag-protease-integrase-RT-RNaseH polyprotein.
  
     0.534
CKAN_01401600
Putative Polyprotein.
  
     0.534
CKAN_00873700
Retrovirus-related Pol polyprotein from transposon TNT 1-94.
  
     0.532
CKAN_01955300
Retrovirus-related Pol polyprotein from transposon TNT 1-94.
  
     0.532
CKAN_00553100
Retrovirus-related Pol polyprotein from transposon TNT 1-94.
  
     0.532
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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