STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00100000RNA recognition motif domain-containing protein. (275 aa)    
Predicted Functional Partners:
CKAN_02596400
Splicing factor U2af large subunit B.
   
 0.972
CKAN_00056100
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.961
CKAN_00259600
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 0.961
CKAN_01811300
X8 domain-containing protein; Belongs to the glycosyl hydrolase 17 family.
   
 0.911
CKAN_02679600
Integumentary mucin A.1-like protein; Belongs to the glycosyl hydrolase 17 family.
   
 0.911
CKAN_02411800
Stem-specific protein TSJT1.
   
 0.911
CKAN_02551800
Integumentary mucin A.1-like protein.
   
 0.911
CKAN_00879500
Stem-specific protein TSJT1.
   
 0.911
CKAN_00880100
DUF3700 domain-containing protein.
   
 0.911
CKAN_02371100
Glucan endo-1,3-beta-glucosidase 3.
   
 0.911
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.