STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00570500Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1. (758 aa)    
Predicted Functional Partners:
CKAN_01856800
G-patch domain-containing protein.
    
 0.993
CKAN_02250700
Zinc finger CCCH domain-containing protein 1.
    
 0.989
CKAN_00893300
Peptidyl-prolyl cis-trans isomerase CYP57.
   
 0.985
CKAN_00930500
Pre-mRNA-processing factor 17 isoform X1.
   
 0.982
CKAN_01321200
WD40 repeat.
   
 0.982
CKAN_01196100
Splicing factor 3B subunit 2-like protein.
   
 0.981
CKAN_00224000
Pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7.
  
 
0.978
CKAN_02017800
Pre-mRNA-splicing factor CWC22.
   
 0.976
CKAN_00117800
RNA-processing protein.
   
 0.976
CKAN_00302400
Pre-mRNA-splicing factor CWC22.
   
 0.976
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.