STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00605300Putative serine/threonine-protein kinase. (593 aa)    
Predicted Functional Partners:
CKAN_02134900
Cyclin-T1-5-like protein isoform X2; Belongs to the cyclin family.
    
 0.897
CKAN_00513300
Cyclin-T1-3 isoform X1; Belongs to the cyclin family.
    
 0.897
CKAN_01116600
Cyclin-T1-3-like protein; Belongs to the cyclin family.
    
 0.897
CKAN_01779500
DNA damage-binding protein 1.
    
 
 0.787
CKAN_01069500
Cyclin-H1-1 isoform X1; Belongs to the cyclin family.
    
 0.727
CKAN_01598500
FACT complex subunit SPT16-like protein.
    
 0.705
CKAN_02262400
Transcription elongation factor SPT4 2.
    
 0.696
CKAN_00899700
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.696
CKAN_02297100
PWWP domain-containing protein.
    
 
 0.690
CKAN_02181700
ENHANCER OF AG-4 protein 2-like protein isoform X1.
    
 
 0.690
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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