STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_00772200Zinc finger protein. (432 aa)    
Predicted Functional Partners:
CKAN_00648800
Zinc finger protein.
    
 0.547
CKAN_01269600
BTB/POZ and TAZ domain-containing protein 3-like protein.
    
 0.547
CKAN_01089200
TATA-box-binding protein.
   
 0.540
GATA
Glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in chloroplasts and mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
      
 0.524
CKAN_02308700
Multiprotein-bridging factor 1c.
    
 
 0.522
CKAN_01898600
Cryptochrome 1.2.
   
  
 0.518
CKAN_01021500
Cryptochrome-1 isoform X2.
   
  
 0.517
CKAN_00602200
Protein GIGANTEA.
    
 0.511
CKAN_02501500
SET domain-containing protein.
    
 0.492
CKAN_00901200
TATA-box-binding protein.
   
 0.491
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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