STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01235000Alpha carbonic anhydrase 1, chloroplastic isoform X1. (270 aa)    
Predicted Functional Partners:
CKAN_01741600
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
     
 0.847
CKAN_02325600
Carbonic anhydrase.
     
 0.770
CKAN_01071300
Carbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family.
     
 0.770
CKAN_02345700
Peter Pan-like protein isoform X1.
   
    0.733
CKAN_00071000
Periodic tryptophan protein 2.
   
    0.714
CKAN_02350900
Pumilio RNA-binding repeat.
   
  
 0.714
CKAN_02186900
Nucleolar complex protein 2.
   
    0.713
CKAN_00645200
U3 small nucleolar RNA-associated protein 4.
   
    0.712
CKAN_00009500
60S ribosomal protein L5-like protein.
    
 
 0.686
CKAN_01268400
60S ribosomal protein L5.
    
 
 0.686
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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