STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01382200Biogenesis of lysosome-related organelles complex 1 subunit 2 isoform X1. (149 aa)    
Predicted Functional Partners:
CKAN_00003100
Biogenesis of lysosome-related organelles complex 1 subunit 1.
   
 
 0.910
CKAN_00982300
Uncharacterized protein.
   
 
 0.910
CKAN_01855200
Uncharacterized protein.
   
 
 0.652
CKAN_02653500
Sorting nexin 1 isoform X1.
    
 
 0.648
CKAN_00749100
Sorting nexin 2A-like protein.
    
 
 0.512
CKAN_00994600
Sorting nexin 2A-like protein.
    
 
 0.512
CKAN_00994900
Sorting nexin 2A-like protein.
    
 
 0.512
CKAN_00995000
Sorting nexin 2A.
    
 
 0.512
CKAN_00467700
WASH complex subunit 1 isoform X1.
    
 
 0.453
CKAN_00365300
Xyloglucan endotransglucosylase/hydrolase; Catalyzes xyloglucan endohydrolysis (XEH) and/or endotransglycosylation (XET). Cleaves and religates xyloglucan polymers, an essential constituent of the primary cell wall, and thereby participates in cell wall construction of growing tissues. Belongs to the glycosyl hydrolase 16 family.
    
 
 0.445
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.