STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01587900Alkylated DNA repair protein alkB 8. (446 aa)    
Predicted Functional Partners:
CKAN_01083400
Multifunctional methyltransferase subunit TRM112-like protein.
   
 0.976
CKAN_01618000
RNA recognition motif domain-containing protein.
 
 
  
 0.860
CKAN_00327400
Nin one binding NOB1 Zn-ribbon-like protein.
   
 0.820
CKAN_00327200
Nin one binding NOB1 Zn-ribbon-like protein.
   
 0.820
CKAN_00320800
Nin one binding NOB1 Zn-ribbon-like protein; Belongs to the NOB1 family.
   
 0.820
CKAN_00319900
Nin one binding NOB1 Zn-ribbon-like protein.
   
 0.820
CKAN_02040000
Pre-rRNA-processing protein TSR1 isoform X1.
   
 0.797
CKAN_00035100
Bystin.
   
 0.765
CKAN_02158200
Protein LTV1.
   
 0.731
CKAN_01140900
Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.
    
 0.719
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.