STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAN_01771300Putative UDP-arabinose 4-epimerase 2 isoform X1. (264 aa)    
Predicted Functional Partners:
CKAN_01512800
ADP-glucose phosphorylase.
  
 0.947
CKAN_00898900
Protein disulfide-isomerase.
  
 0.947
CKAN_00206600
Remorin-like protein.
  
 0.938
CKAN_00625000
Remorin 4.1-like protein.
  
 0.938
CKAN_02384800
Galactokinase.
  
 0.938
CKAN_01140400
L-arabinokinase-like protein isoform X1.
  
 0.938
CKAN_00803200
UDP-sugar pyrophosphorylase-like protein.
    
 0.876
CKAN_00524800
UDP-glucuronic acid decarboxylase 6.
   
0.856
CKAN_01110800
NAD-dependent epimerase/dehydratase.
   
 0.856
CKAN_02352300
Cellulose synthase-like protein D5; Belongs to the glycosyltransferase 2 family.
     
 0.846
Your Current Organism:
Cinnamomum micranthum
NCBI taxonomy Id: 337451
Other names: C. micranthum f. kanehirae, Cinnamomum kanehirae, Cinnamomum kanehirae Hayata, Cinnamomum kanehirai, Cinnamomum micranthum f. kanehirae, Cinnamomum micranthum f. kanehirae (Hayata) S.S.Ying, Cinnamomum micranthum f. kanehirai
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